Peer-reviewed paper Oct 9, 2018 MBio Microbiome studies Prof Philip Hugenholtz A natural history of actinic keratosis and cutaneous squamous cell carcinoma microbiomes Wood DLA, Lachner N, Tan JM, ..., Soyer HP, Hugenholtz P. doi: 10.1128/mBio.01432-18
Peer-reviewed paper Aug 27, 2018 Nature Biotechnology Genome-based taxonomy Prof Philip Hugenholtz A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life Parks DH, Chuvochina M, Waite, DW, ..., Chaumeil PA, Hugenholtz P. doi: 10.1038/nbt.4229
Peer-reviewed paper Jun 1, 2018 Nucleic Acids Research Metagenomic analysis Prof Gene Tyson GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes Boyd JA, Woodcroft BJ, ..., Tyson GW. doi: 10.1093/nar/gky174
Peer-reviewed paper Sep 11, 2017 Nature Microbiology Genome discovery Prof Gene Tyson Prof Philip Hugenholtz Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life Parks DH, Rinke C, Chuvochina M, ..., Hugenholtz P, Tyson GW. doi: 10.1038/s41564-017-0012-7
Peer-reviewed paper Aug 1, 2017 Nature Biotechnology Genome discovery Prof Philip Hugenholtz Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers RM, Kyrpides NC, Stepanauskas R, ..., Hugenholtz P, Woyke T. doi: 10.1038/nbt.3893
Peer-reviewed paper Mar 1, 2017 Bioinformatics A.Prof Lutz Krause Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions Zakrzewski M, Prorietti C, Ellis JJ, … , Berger B, Krause L
Peer-reviewed paper Oct 3, 2016 Nature Reviews Microbiology Microbiome studies Prof Gene Tyson Emerging pathogenic links between microbiota and the gut–lung axis Budden KF, Gellatly SL, Wood DLA, ..., Hugenholtz P, Hansbro PM. doi: 10.1038/nrmicro.2016.142
Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper Mar 17, 2016 Microbial Evolution Genome-based taxonomy Genome-based microbial taxonomy coming of age Hugenholtz P, Skarshewski A, ..., Parks DH. doi: 10.1101/cshperspect.a018085
