Peer-reviewed paper Jan 23, 2019 PLoS Pathogens A.Prof Lutz Krause Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium Oey H, Zakrzewski M, Gravermann K, … , McManus DP, Krause L.
Peer-reviewed paper Jan 21, 2019 Nature Reviews Microbiology Genome-based taxonomy Prof Gene Tyson Prof Philip Hugenholtz An evolving view of methane metabolism in the Archaea Evans PN, Boyd JA, Leu AO, ..., Hugenholtz P, Tyson GW. doi: 10.1038/s41579-018-0136-7
Peer-reviewed paper Oct 9, 2018 MBio Microbiome studies Prof Philip Hugenholtz A natural history of actinic keratosis and cutaneous squamous cell carcinoma microbiomes Wood DLA, Lachner N, Tan JM, ..., Soyer HP, Hugenholtz P. doi: 10.1128/mBio.01432-18
Peer-reviewed paper Aug 27, 2018 Nature Biotechnology Genome-based taxonomy Prof Philip Hugenholtz A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life Parks DH, Chuvochina M, Waite, DW, ..., Chaumeil PA, Hugenholtz P. doi: 10.1038/nbt.4229
Peer-reviewed paper Sep 11, 2017 Nature Microbiology Genome discovery Prof Gene Tyson Prof Philip Hugenholtz Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life Parks DH, Rinke C, Chuvochina M, ..., Hugenholtz P, Tyson GW. doi: 10.1038/s41564-017-0012-7
Peer-reviewed paper Aug 1, 2017 Nature Biotechnology Genome discovery Prof Philip Hugenholtz Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers RM, Kyrpides NC, Stepanauskas R, ..., Hugenholtz P, Woyke T. doi: 10.1038/nbt.3893
Peer-reviewed paper Mar 1, 2017 Bioinformatics A.Prof Lutz Krause Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions Zakrzewski M, Prorietti C, Ellis JJ, … , Berger B, Krause L
Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
