Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
Peer-reviewed paper Nov 1, 2014 Bioinformatics Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz STAMP: statistical analysis of taxonomic and functional profiles Parks DH, Tyson GW, Hugenholtz P, ..., Beiko RG. doi: 10.1093/bioinformatics/btu494
Peer-reviewed paper Sep 30, 2014 PeerJ Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz GroopM: an automated tool for the recovery of population genomes from related metagenomes. Imelfort M, Parks DH, Woodcroft BJ, ..., Hugenholtz P, Tyson GW. doi: 10.7717/peerj.603. eCollection 2014
Peer-reviewed paper Apr 2, 2014 Genome Biology A.Prof Lutz Krause Hypermethylation in the ZBTB20 gene is associated with major depressive disorder Davies MN, Krause L, Bell JT, … , Spector TD, Wang J.
Peer-reviewed paper Oct 15, 2009 Bioinformatics Metagenomic analysis Prof Philip Hugenholtz ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes Kristiansson E, Hugenholtz P, ..., Dalevi D. doi: 10.1093/bioinformatics/btp508
Peer-reviewed paper Jan 15, 2007 Nucleic Acids Research A.Prof Lutz Krause GISMO—gene identification using a support vector machine for ORF classification Krause L, McHardy AC, Nattkemper TW, … , Stoye J, Meyer F.
Peer-reviewed paper Jul 15, 2006 Bioinformatics A.Prof Lutz Krause Finding novel genes in bacterial communities isolated from the environment Krause L, Diaz NN, Bartels D, … , Meyer F, Stoye J
