Peer-reviewed paper Jun 1, 2018 Nucleic Acids Research Metagenomic analysis Prof Gene Tyson GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes Boyd JA, Woodcroft BJ, ..., Tyson GW. doi: 10.1093/nar/gky174
Peer-reviewed paper Sep 11, 2017 Nature Microbiology Genome discovery Prof Gene Tyson Prof Philip Hugenholtz Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life Parks DH, Rinke C, Chuvochina M, ..., Hugenholtz P, Tyson GW. doi: 10.1038/s41564-017-0012-7
Peer-reviewed paper Aug 1, 2017 Nature Biotechnology Genome discovery Prof Philip Hugenholtz Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers RM, Kyrpides NC, Stepanauskas R, ..., Hugenholtz P, Woyke T. doi: 10.1038/nbt.3893
Peer-reviewed paper Mar 1, 2017 Bioinformatics A.Prof Lutz Krause Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions Zakrzewski M, Prorietti C, Ellis JJ, … , Berger B, Krause L
Peer-reviewed paper Oct 3, 2016 Nature Reviews Microbiology Microbiome studies Prof Gene Tyson Emerging pathogenic links between microbiota and the gut–lung axis Budden KF, Gellatly SL, Wood DLA, ..., Hugenholtz P, Hansbro PM. doi: 10.1038/nrmicro.2016.142
Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper Mar 17, 2016 Microbial Evolution Genome-based taxonomy Genome-based microbial taxonomy coming of age Hugenholtz P, Skarshewski A, ..., Parks DH. doi: 10.1101/cshperspect.a018085
Peer-reviewed paper Oct 23, 2015 Science Genome-based taxonomy Prof Gene Tyson Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics Evans PN, Parks DH, Chadwick GL, ..., Golding SD, Tyson GW. doi: 10.1126/science.aac7745
Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
