Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper Mar 17, 2016 Microbial Evolution Genome-based taxonomy Genome-based microbial taxonomy coming of age Hugenholtz P, Skarshewski A, ..., Parks DH. doi: 10.1101/cshperspect.a018085
Peer-reviewed paper Oct 23, 2015 Science Genome-based taxonomy Prof Gene Tyson Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics Evans PN, Parks DH, Chadwick GL, ..., Golding SD, Tyson GW. doi: 10.1126/science.aac7745
Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
Peer-reviewed paper Nov 1, 2014 Bioinformatics Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz STAMP: statistical analysis of taxonomic and functional profiles Parks DH, Tyson GW, Hugenholtz P, ..., Beiko RG. doi: 10.1093/bioinformatics/btu494
Peer-reviewed paper Sep 30, 2014 PeerJ Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz GroopM: an automated tool for the recovery of population genomes from related metagenomes. Imelfort M, Parks DH, Woodcroft BJ, ..., Hugenholtz P, Tyson GW. doi: 10.7717/peerj.603. eCollection 2014
Peer-reviewed paper Apr 2, 2014 Genome Biology A.Prof Lutz Krause Hypermethylation in the ZBTB20 gene is associated with major depressive disorder Davies MN, Krause L, Bell JT, … , Spector TD, Wang J.
Peer-reviewed paper May 26, 2013 Nature Biotechnology Genome discovery Prof Gene Tyson Prof Philip Hugenholtz Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes Albertsen M, Hugenholtz P, Skarshewski A, ..., Tyson GW, Nielsen P. doi: 10.1038/nbt.2579
Peer-reviewed paper Oct 15, 2009 Bioinformatics Metagenomic analysis Prof Philip Hugenholtz ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes Kristiansson E, Hugenholtz P, ..., Dalevi D. doi: 10.1093/bioinformatics/btp508
