Peer-reviewed paper Mar 1, 2017 Bioinformatics A.Prof Lutz Krause Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions Zakrzewski M, Prorietti C, Ellis JJ, … , Berger B, Krause L
Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper Mar 17, 2016 Microbial Evolution Genome-based taxonomy Genome-based microbial taxonomy coming of age Hugenholtz P, Skarshewski A, ..., Parks DH. doi: 10.1101/cshperspect.a018085
Peer-reviewed paper Oct 23, 2015 Science Genome-based taxonomy Prof Gene Tyson Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics Evans PN, Parks DH, Chadwick GL, ..., Golding SD, Tyson GW. doi: 10.1126/science.aac7745
Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
Peer-reviewed paper Nov 1, 2014 Bioinformatics Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz STAMP: statistical analysis of taxonomic and functional profiles Parks DH, Tyson GW, Hugenholtz P, ..., Beiko RG. doi: 10.1093/bioinformatics/btu494
Peer-reviewed paper Sep 30, 2014 PeerJ Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz GroopM: an automated tool for the recovery of population genomes from related metagenomes. Imelfort M, Parks DH, Woodcroft BJ, ..., Hugenholtz P, Tyson GW. doi: 10.7717/peerj.603. eCollection 2014
Peer-reviewed paper Apr 2, 2014 Genome Biology A.Prof Lutz Krause Hypermethylation in the ZBTB20 gene is associated with major depressive disorder Davies MN, Krause L, Bell JT, … , Spector TD, Wang J.
Peer-reviewed paper Oct 15, 2009 Bioinformatics Metagenomic analysis Prof Philip Hugenholtz ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes Kristiansson E, Hugenholtz P, ..., Dalevi D. doi: 10.1093/bioinformatics/btp508