Peer-reviewed paper Oct 9, 2018 MBio Microbiome studies Prof Philip Hugenholtz A natural history of actinic keratosis and cutaneous squamous cell carcinoma microbiomes Wood DLA, Lachner N, Tan JM, ..., Soyer HP, Hugenholtz P. doi: 10.1128/mBio.01432-18
Peer-reviewed paper Aug 27, 2018 Nature Biotechnology Genome-based taxonomy Prof Philip Hugenholtz A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life Parks DH, Chuvochina M, Waite, DW, ..., Chaumeil PA, Hugenholtz P. doi: 10.1038/nbt.4229
Peer-reviewed paper Jun 1, 2018 Nucleic Acids Research Metagenomic analysis Prof Gene Tyson GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes Boyd JA, Woodcroft BJ, ..., Tyson GW. doi: 10.1093/nar/gky174
Peer-reviewed paper Sep 11, 2017 Nature Microbiology Genome discovery Prof Gene Tyson Prof Philip Hugenholtz Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life Parks DH, Rinke C, Chuvochina M, ..., Hugenholtz P, Tyson GW. doi: 10.1038/s41564-017-0012-7
Peer-reviewed paper Aug 1, 2017 Nature Biotechnology Genome discovery Prof Philip Hugenholtz Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea Bowers RM, Kyrpides NC, Stepanauskas R, ..., Hugenholtz P, Woyke T. doi: 10.1038/nbt.3893
Peer-reviewed paper Mar 1, 2017 Bioinformatics A.Prof Lutz Krause Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions Zakrzewski M, Prorietti C, Ellis JJ, … , Berger B, Krause L
Peer-reviewed paper Apr 1, 2016 Carcinogenesis A.Prof Lutz Krause Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma Krause L, Nones K, Loffler KA, … , Waddell N, Barbour AP
Peer-reviewed paper Mar 17, 2016 Microbial Evolution Genome-based taxonomy Genome-based microbial taxonomy coming of age Hugenholtz P, Skarshewski A, ..., Parks DH. doi: 10.1101/cshperspect.a018085
Peer-reviewed paper Oct 23, 2015 Science Genome-based taxonomy Prof Gene Tyson Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics Evans PN, Parks DH, Chadwick GL, ..., Golding SD, Tyson GW. doi: 10.1126/science.aac7745