Peer-reviewed paper Jun 1, 2018 Nucleic Acids Research Metagenomic analysis Prof Gene Tyson GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes Boyd JA, Woodcroft BJ, ..., Tyson GW. doi: 10.1093/nar/gky174
Peer-reviewed paper May 14, 2015 Genome Research Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks DH, Imelfort M, Skennerton CT, ..., Hugenholtz P, Tyson GW. doi: 10.1101/gr.186072.114
Peer-reviewed paper Nov 1, 2014 Bioinformatics Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz STAMP: statistical analysis of taxonomic and functional profiles Parks DH, Tyson GW, Hugenholtz P, ..., Beiko RG. doi: 10.1093/bioinformatics/btu494
Peer-reviewed paper Sep 30, 2014 PeerJ Metagenomic analysis Prof Gene Tyson Prof Philip Hugenholtz GroopM: an automated tool for the recovery of population genomes from related metagenomes. Imelfort M, Parks DH, Woodcroft BJ, ..., Hugenholtz P, Tyson GW. doi: 10.7717/peerj.603. eCollection 2014
Peer-reviewed paper Oct 15, 2009 Bioinformatics Metagenomic analysis Prof Philip Hugenholtz ShotgunFunctionalizeR: an R-package for functional comparison of metagenomes Kristiansson E, Hugenholtz P, ..., Dalevi D. doi: 10.1093/bioinformatics/btp508